Journal article

Colonization with antibiotic resistant bacteria in communities and hospitals across six countries, including Bangladesh, Botswana, Chile, Guatemala, India, and Kenya


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Author list: Gemma Parra1, Ebbing Lautenbach2, Mosepele Mosepele3, Naledi Mannathoko3,
RobertGross2, Douglas R. Call4, Brooke M. Ramay4, Sylvia Omulo4, C. P.Girish Kumar5,
Tarun Bhatnagar5, Fahmida Chowdhury6, Syeda Mah-E-Muneer6, RafaelAraos7,
Jose M. Munita7, JohannaAcevedo7, Garrett Mahon1, Rachel M. Smith1 & Ashley Styczynski1

Publication year: 2025

Journal acronym: Sci Rep

Volume number: 15

Issue number: 1

ISSN: 2045-2322

eISSN: 2045-2322



The recognized burden of antimicrobial resistance (AR) is greatest in low- and middle-income countries (LMICs), but limitations in surveillance preclude accurate estimates of AR. We aimed to evaluate colonization in communities and hospitals across six LMICs for two clinically-important pathogens: extended-spectrum cephalosporin-resistant Enterobacterales (ESCrE) and carbapenemresistant Enterobacterales (CRE). Participants in hospitals and communities provided rectal swabs or stool samples for ESCrE and CRE identification. Isolates recovered from selective agars underwent confirmatory identification and antibiotic susceptibility testing (AST) using Vitek® 2, MALDI-TOF, and/ or disc diffusion testing. ESCrE and CRE were defined based on established breakpoints of phenotypic resistance to third-generation cephalosporins and carbapenems, respectively, to calculate prevalence of colonization. Community prevalence estimates were weighted to account for sampling design differences. A total of 10,139 participants across the 6 countries provided samples; 63% were females with a median age of 35 years (range: 0–99). Colonization with ESCrE in hospitals was high in all sites (range 34–84%). In communities, ESCrE colonization ranged from 22 to 77%. Prevalence of CRE colonization in hospitals ranged from 7 to 36% and in communities ranged from <1 to 14%. These findings reveal a high burden of AR colonization in LMICs in both communities and hospitals. Costeffective strategies to reduce AR colonization burden are needed in LMICs.


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Last updated on 2026-16-02 at 15:23